Prunning bad Spectra

This will show the process of using the Pruning tasks by bill



 LAS90&gt; @ sup:checkAll4prune orion_cfv_split P_8May2013 orion_cfv_prune


 *  ·        BEAMRCFILE = sup:5May13_rc.lis


 *  o   This checks the rastors of the splits files created by the pipeline and decides what is bad/correct



 Shell &gt; more orion_cfv_prune*.class 


 *  ·         Check some of the details of the class file



 shell&gt; tail -n1 -q *evenOdd.lis &gt; badScans.lis


 *  ·         get the last line of all the .class files and writing it to badscans.lis


 *  o   the last line constains the information of the spectras that have to be prune



<p class=NoteLevel1CxSpMiddle style='margin-left:0in;text-indent:0in'> shell&gt; $SUP_MACROS/makePrune.awk pref=orion_cfv_split drop=orion_cfv_prune 

<p class=NoteLevel1CxSpMiddle style='margin-left:0in;text-indent:0in'>badScans.lis &gt; doPrune.class

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<p class=NoteLevel1CxSpMiddle style='margin-left:0in;text-indent:0in'> LAS90&gt; @ doPrune


 * <p class=NoteLevel2CxSpFirst> ·         This starts  process of pruning on the split files


 * <p class=NoteLevel2CxSpLast> ·         Now what you want to do is rerun the pipeline

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<p class=NoteLevel1CxSpMiddle style='margin-left:0in;text-indent:0in'> shell&gt; $SUP_MACROS/makeDoPipe.awk pref=orion_cfv_split pars=orion_cfv_par.txt redo=1 $SUP_MACROS/5May13_beam.lis


 * <p class=NoteLevel2CxSpFirst> ·         This is to rewrite the batch mode of the pipeline with the new data.


 * <p class=NoteLevel2CxSpMiddle> ·         Note: redo=1 means that it will erase the previous pipeline files and write new ones


 * <p class=NoteLevel2CxSpLast> ·         Check pipeline documentation to see how to keep the old files

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<p class=NoteLevel1CxSpMiddle style='margin-left:0in;text-indent:0in'> shell&gt; source redoAllPipe.sh


 * <p class=NoteLevel2CxSpFirst> ·         this starts the batchmode of the pipeline


 * <p class=NoteLevel2CxSpLast> ·         onces it is finish you should have all the .lmv and split##P files with the pruning done

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